Publications

All Altman Ay Benedict Cheroutre Croft Crotty Einav Eschweiler Grifoni Hedrick Hogan Kawakami Kronenberg Ley Lindestam Lisdestam Arlehamn Myers Pandurangan Peters Rao Reina Saphire Schmiedel Schoenberger Sette Seumois Sharma Shresta Vijayanand Von Herrath Weiskopf

Jul 15, 2016

J Immunol

Transcriptional profiling of Th2 cells identifies pathogenic features associated with asthma

Seumois G, Zapardiel-Gonzalo J, White B, Singh D, Shulten V, Dillon M, Hinz D, Broide DH, Sette A, Peters B, Vijayanand P

Nov 01, 2017

J Immunol

NetMHCpan-4.0: improved peptide-MHC class I interaction predictions integrating eluted ligand and peptide binding affinity data

Jurtz V, Paul S, Andreatta M, Marcatili P, Peters B, Nielsen M

Nov 01, 2017

Front Immunol

Reproducibility and reuse of adaptive immune receptor repertoire data

Breden F, Luning Prak ET, Peters B, Rubelt F, Schramm CA, Busse CE, Vander Heiden JA, Christley S, Bukhari SAC, Thorogood A, Matsen Iv FA, Wine Y, Laserson U, Klatzmann D, Douek DC, Lefranc MP, Collins AM, Bubela T, Kleinstein SH, Watson CT, Cowell LG, Scott JK, Kepler TB

Oct 13, 2017

Front Immunol

Global assessment of dengue virus-specific CD4+ T cell responses in dengue-endemic areas

Grifoni A, Angelo MA, Lopez B, O’Rourke PH, Sidney J, Cerpas C, Balmaseda A, Silveira CGT, Maestri A, Costa PR, Durbin AP, Diehl SA, Phillips E, Mallal S, De Silva AD, Nchinda G, Nkenfou C, Collins MH, de Silva AM, Lim MQ, Macary PA, Tatullo F, Solomon T, Satchidanandam V, Desai A, Ravi V, Coloma J, Turtle L, Rivino L, Kallas EG, Peters B, Harris E, Sette A, Weiskopf D

Oct 04, 2017

J Virol

Prior dengue virus exposure shapes T cell immunity to zika virus in humans

Grifoni A, Pham J, Sidney J, O’Rourke PH, Paul S, Peters B, Martini SR, de Silva AD, Ricciardi MJ, Magnani DM, Silveira CGT, Maestri A, Costa PR, de-Oliveira-Pinto LM, de Azeredo EL, Damasco PV, Phillips E, Mallal S, de Silva AM, Collins M, Durbin A, Diehl SA, Cerpas C, Balmaseda A, Kuan G, Coloma J, Harris E, Crowe JE Jr, Stone M, Norris PJ, Busch M, Vivanco-Cid H, Cox J, Graham BS, Ledgerwood JE, Turtle L, Solomon T, Kallas EG, Watkins D, Weiskopf D, Sette A

Sep 01, 2017

Expert Rev Proteomics

Deciphering the MHC-associated peptidome: a review of naturally processed ligand data

Vaughan K, Xu X, Caron E, Peters B, Sette A

Aug 17, 2017

Sci Rep

Shared peptide binding of HLA class I and II alleles associate with cutaneous nevirapine hypersensitivity and identify novel risk alleles

Pavlos R, McKinnon EJ, Ostrov DA, Peters B, Buus S, Koelle D, Chopra A, Schutte R, Rive C, Redwood A, Restrepo S, Bracey A, Kaever T, Myers P, Speers E, Malaker SA, Shabanowitz J, Jing Y, Gaudieri S, Hunt DF, Carrington M, Haas DW, Mallal S, Phillips EJ

Jun 29, 2017

Nature

T cells from patients with Parkinson’s disease recognize α-synuclein peptides

Sulzer D, Alcalay RN, Garretti F, Cote L, Kanter E, Agin-Liebes J, Liong C, McMurtrey C, Hildebrand WH, Mao X, Dawson VL, Dawson TM, Oseroff C, Pham J, Sidney J, Dillon MB, Carpenter C, Weiskopf D, Phillips E, Mallal S, Peters B, Frazier A, Lindestam Arlehamn CS, Sette A

Jun 21, 2017

BMC Immunol

Experimental validation of the RATE tool for inferring HLA restrictions of T cell epitopes

Paul S, Arlehamn CSL, Schulten V, Westernberg L, Sidney J, Peters B, Sette A

May 24, 2017

Immunology

Machine learning reveals a non-canonical mode of peptide binding to MHC class II molecules

Andreatta M, Jurtz VI, Kaever T, Sette A, Peters B, Nielsen M

May 08, 2017

PLoS One

Citrullination only infrequently impacts peptide binding to HLA class II MHC

Sidney J, Becart S, Zhou M, Duffy K, Lindvall M, Moore EC, Moore EL, Rao T, Rao N, Nielsen M, Peters B, Sette A

May 02, 2017

Nucleic Acids Res

BepiPred-2.0: improving sequence-based B-cell epitope prediction using conformational epitopes

Jespersen MC, Peters B, Nielsen M, Marcatili P