Publications

Apr 18, 2024 J Chem Inf Model

Machine Learning of Three-Dimensional Protein Structures to Predict the Functional Impacts of Genome Variation

Shukla K, Idanwekhai K, Naradikian M, Ting S, Schoenberger SP, Brunk E.

May 30, 2023 Cell Rep

Human papillomavirus e5 suppresses immunity via inhibition of the immunoproteasome and sting pathway

Miyauchi S, Kim SS, Jones RN, Zhang L, Guram K, Sharma S, Schoenberger SP, Cohen EEW, Califano JA, Sharabi AB

May 7, 2023 bioRxiv

Linked CD4 + /CD8 + T cell neoantigen vaccination overcomes immune checkpoint blockade resistance and enables tumor regression

Dolina JS, Lee J, Brightman SE, McArdle S, Hall SM, Thota RR, Lanka M, Premlal ALR, Greenbaum JA, Cohen EEW, Peters B, Schoenberger SP

May 5, 2023 bioRxiv

Linked CD4 + /CD8 + T cell neoantigen vaccination overcomes immune checkpoint blockade resistance and enables tumor regression

Joseph S Dolina, Joey Lee, Spencer E Brightman, Sara McArdle, Samantha M Hall, Rukman R Thota, Manasa Lanka, Ashmitaa Logandha Ramamoorthy Premlal, Jason A Greenbaum, Ezra E W Cohen, Bjoern Peters, Stephen P Schoenberger

Mar 3, 2023 Nat Immunol

Neoantigen-specific stem cell memory-like CD4+ T cells mediate CD8+ T cell-dependent immunotherapy of MHC class II-negative solid tumors

Brightman SE, Becker A, Thota RR, Naradikian MS, Chihab L, Zavala KS, Griswold RQ, Dolina JS, Cohen EEW, Miller AM, Peters B, Schoenberger SP

Jan 6, 2023 Nucleic Acids Res

The Cancer Epitope Database and Analysis Resource (CEDAR)

Koşaloğlu-Yalçın Z, Blazeska N, Vita R, Carter H, Nielsen M, Schoenberger S, Sette A, Peters B

Jan 1, 2023 J Immunother Cancer

Treatment of pancreatic cancer with irreversible electroporation and intratumoral CD40 antibody stimulates systemic immune responses that inhibit liver metastasis in an orthotopic model

Shankara Narayanan JS, Hayashi T, Erdem S, McArdle S, Tiriac H, Ray P, Pu M, Mikulski Z, Miller A, Messer K, Carson D, Schoenberger S, White RR.

Mar 18, 2022 iScience

Combined assessment of MHC binding and antigen abundance improves T cell epitope predictions

Koşaloğlu-Yalçın Z, Lee J, Greenbaum J, Schoenberger SP, Miller A, Kim YJ, Sette A, Nielsen M, Peters B.

Mar 3, 2022 Proc Natl Acad Sci U S A

Developmentally distinct CD4 + T reg lineages shape the CD8 + T cell response to acute Listeria infection

Dolina JS, Lee J, Moore EL, Hope JL, Gracias DT, Matsutani T, Chawla A, Greenbaum JA, Linden J, Schoenberger SP.

Aug 24, 2021 Front Immunol.

The cancer epitope database and analysis resource: a blueprint for the establishment of a new bioinformatics resource for use by the cancer immunology community.

Koşaloğlu-Yalçın Z, Blazeska N, Carter H, Nielsen M, Cohen E, Kufe D, Conejo-Garcia J, Robbins P, Schoenberger SP, Peters B, Sette A.

Mar 30, 2021 Proc Natl Acad Sci U S A.

Single-cell analysis of immune repertoires enabled.

Schoenberger SP.

Mar 14, 2020 J Leukoc Biol

Harnessing Neoantigen Specific CD4 T Cells for Cancer Immunotherapy

Brightman SE, Naradikian MS, Miller AM, Schoenberger SP.