Sette Lab

Alessandro Sette, Dr.Biol.Sci.

Professor

Center for Autoimmunity and Inflammation – Director
Center for Cancer Immunotherapy
Center for Vaccine Innovation

New infectious agents originate all the time dating back to the plague in the siege of Athens in the 7th century to the endemic flu in 1918 that killed 20 million people. For medical science, it’s a perennial race between new infectious diseases coming up and society reacting to them, understanding them and ultimately defeating them.

Overview


Dr. Alessandro Sette has devoted more than 35 years of study towards understanding the immune response, measuring immune activity, and developing disease intervention strategies against cancer, autoimmunity, allergy, and infectious diseases. The laboratory is defining in chemical terms the specific structures (epitopes) that the immune system recognizes, and uses this knowledge to measure and understand immune responses.

The Sette lab’s approach uses epitopes as specific probes to define the immune signatures associated with productive/protective immunity versus deficient immunity/immunopathology. This research will improve understanding of how the body successfully battles infection, and conversely, how pathogens escape the immune system, causing the individual to succumb to disease. Because of the laboratory’s success in its study of immune response, Sette and his team believe their research will lead to development of new therapeutic and prophylactic approaches to fighting infectious diseases. In this area, Dr. Sette’s disease focus has shifted over the years from HIV, HBV and HCV to emerging diseases and diseases of potential biodefense concern to, most recently, diseases and pathogens relevant to worldwide global health, including SARS-CoV-2, Dengue, Zika, Chikungunya, malaria, M. tuberculosis, B. pertussis, and shingles. Furthermore, Dr. Sette’s team has adapted the methods and techniques developed in the context of infectious disease to understand the T cell response to common allergens and to discover a cell component in Parkinson’s Disease.

Finally, Dr. Sette has overseen the design and curation efforts of the national Immune Epitope Database (IEDB), a freely available, widely used bioinformatics resource, since its inception in the early 2000s. The IEDB catalogs all epitopes for humans, non-human primates, rodents, and other vertebrates, from allergens, infectious diseases, autoantigens and transplants, and includes epitope prediction tools to accelerate immunology research around the world.

Additional Publications

Featured Publications

Mateus J, Grifoni A, Tarke A, Sidney J, Ramirez SI, Dan JM, Burger ZC, Rawlings SA, Smith DM, Phillips E, Mallal S, Lammers M, Rubiro P, Quiambao L, Sutherland A, Yu ED, da Silva Antunes R, Greenbaum J, Frazier A, Markmann AJ, Premkumar L, de Silva A, Peters B, Crotty S, Sette A, Weiskopf D.
Sette, A., Crotty, S
Grifoni, A., Weiskopf, D., Ramirez, S.I., Mateus, J., Dan, J.M., Moderbacher, C.R., Rawlings, S.A., Sutherland, A., Premkumar, L., Jadi, R.S., Marrama, D., de Silva, A.M., Frazier, A., Carlin, A., Greenbaum, J.A., Peters, B., Krammer, F., Smith, D.M., Crotty, S., Sette, A.,
Sette A, Crotty S.
Dan JM, Mateus J, Kato Y, Hastie KM, Yu ED, Faliti CE, Grifoni A, Ramirez SI, Haupt S, Frazier A, Nakao C, Rayaprolu V, Rawlings SA, Peters B, Krammer F, Simon V, Saphire EO, Smith DM, Weiskopf D, Sette A, Crotty S.
Goel RR, Painter MM, Apostolidis SA, Mathew D, Meng W, Rosenfeld AM, Lundgreen KA, Reynaldi A, Khoury DS, Pattekar A, Gouma S, Kuri-Cervantes L, Hicks P, Dysinger S, Hicks A, Sharma H, Herring S, Korte S, Baxter AE, Oldridge DA, Giles JR, Weirick ME, McAllister CM, Awofolaju M, Tanenbaum N, Drapeau EM, Dougherty J, Long S, D’Andrea K, Hamilton JT, McLaughlin M, Williams JC, Adamski S, Kuthuru O, UPenn COVID Processing Unit, Frank I, Betts MR, Vella LA, Grifoni A, Weiskopf D, Sette A, Hensley SE, Davenport MP, Bates P, Prak ETL, Greenplate AR, Wherry EJ.

Lab Members

Adam Abawi

Research Tech I

Nina Blazeska

IEDB Project Manager

Matthew Busse

Senior Curator

Kenneth Chan

Senior Curator

Sara Coleman, Ph.D.

Curator

Ricardo Da Silva Antunes

Instructor

Sidne Fitzpatrick, Ph.D.

Curator

Gabriele Foos

Senior Curator

April Frazier, Ph.D.

Senior Project Manager

John Johansson, Ph.D.

Visiting Scientist

Min Han Lew, Ph.D.

Postdoctoral Fellow

Mariah Macias

Lab Assistant

Tanner Michaelis

Research Tech II

Erin Moore

Research Tech I

Priscila Morales, Associates

Project Coordinator

Jessica Nevarez-Mejia, Ph.D.

Postdoctoral Fellow

Brian Reardon, Ph.D.

Curator

Caitlin Sedwick, Ph.D.

Curator
Portrait photo of Alessandro Sette, Dr.Biol.Sci.

Alessandro Sette

Division Head/Center Head/Professor

Deborah Shackelford

Senior Curator

Amin Shaik

Research Tech I

John Sidney

Sr. Staff Scientist

Aaron Sutherland

Lab Manager/Research Tech III

Alison Tarke

Postdoctoral Fellow

Veronica Veksler, Ph.D.

Postdoctoral Fellow

Randi Vita

Lead Ontology & Quality Manager

Leora Zalman

Senior Curator

Research Projects

ATHEROSCLEROSIS Working in collaboration with LJI Professor Klaus Ley, the Sette Lab aims to help develop vaccines that target inflammatory factors as a means to reduce atherosclerotic plaque formation. The [...]

T cell responses to Mycobacterium tuberculosis infection and vaccination: Following completion of a massive epitope discovery effort (also supported by an NIH contract), current work on TB includes identifying T [...]

The Sette lab’s previous large scale epitope identification efforts (supported by HHS contracts) have led to a deeper understanding of the role of T cells and HLA variants in the [...]

From the Lab

New LJI review shows how T cells target more than 1,400 sites on SARS-CoV-2
Professors Shane Crotty, Ph.D., and Alessandro Sette, Dr. Biol.Sci., of La Jolla Institute for Immunology have been named as AAAS Fellows
Surprising insights on pertussis vaccines pave the way for next-gen protection
With the global supply of Covid-19 vaccine still woefully inadequate, vaccine makers are scouring the pharmaceutical landscape for partners to ramp up manufacturing
Recovery from the virus seems to stimulate protective immunity, but there’s not enough data to determine how long that protection lasts.
The finding is important to both the basic understanding of this disease—the world’s most common mosquito-borne illness—and to the hunt for an effective vaccine for dengue.
Some people who’ve never been exposed to the novel coronavirus may have protection against it, but that is far from certain
The following is a brief roundup of some of the latest scientific studies on the novel coronavirus and efforts to find treatments and vaccines for COVID-19, the illness caused by the virus.
The body’s immune system is immensely intricate. A new study released in the UK is causing a stir because of what it says about possible limits to our immunity to COVID-19. Dr. Alessandro Sette talks with The World’s Marco Werman about what the study’s results mean for the possibility of a strong coronavirus vaccine.
After infection or vaccination immunity to the virus may be long lasting
New findings suggest that immune response to COVID-19 may be long-lasting.
New LJI study shows how the fully vaccinated respond to a range of SARS-CoV-2 variants
New funding from the National Cancer Institute will let scientists get “whole picture” of the immune response
We’re now more than seven months into the coronavirus pandemic that has upended the lives of most of Earth’s inhabitants.
International collaboration provides important piece of COVID-19 puzzle
Researchers caution: It is too soon to say whether pre-existing immune cell memory affects COVID-19 clinical outcomes
LJI researchers work to head off future pandemics by uncovering key similarities between SARS-CoV-2 and common cold coronaviruses
Study finds robust antiviral T cell response in humans with COVID-19 and detects substantial crossreactivity in unexposed individuals; in a piece of good news provides a benchmark for testing of vaccine candidates.
New research suggests that some of us may be partially protected due to past encounters with common cold coronaviruses
This year’s list features four scientists at La Jolla Institute for Immunology
People who have already been sick with Covid-19 should still be vaccinated, experts say, but they may experience intense side effects even after one dose.
LA JOLLA, CA—New research from scientists at La Jolla Institute for Immunology (LJI) suggests people who received COVID-19 vaccines and then experienced “breakthrough” infections are especially well armed against future SARS-CoV-2 infections.
Throughout the pandemic, scientists in San Diego have made big contributions
LJI Professors Shane Crotty, Ph.D., Bjoern Peters, Ph.D., and Alessandro Sette, Dr. Biol. Sci., were named “Highly Cited Researchers” this week by Clarivate.
The IEDB gives biomedical researchers worldwide free access to a rapidly growing catalogue of epitopes—the specific, molecular structures that the immune system uses to tell friend from foe
National Cancer Institute support brings cancer researchers together to share key findings
The fellowship specifically supports interdisciplinary training to encourage understanding between immunology researchers and computational scientists
Tarke established important U.S.-Italy research collaborations amidst the COVID-19 pandemic
To aid vaccine design, researchers will investigate how a diverse population fights off viral attack
There’s even more reason to think a vaccine developed against smallpox can help the body fight against mpox (monkeypox virus disease) as well, according to researchers at La Jolla Institute for Immunology (LJI).
Their analysis provides essential information for vaccine design and the evaluation of diagnostics and vaccine candidates
San Diego scientists investigate how immune cells combat rapidly spreading mpox strain
New research gives further evidence that autoimmunity plays a role in Parkinson’s disease
New investigation reveals the strength of T cell, B cell, and antibody responses over time
A record number of LJI researchers have been named to the 2022 list, including two early career scientists
Even elderly survivors show a strong, persistent immune memory
LJI researchers highlight the importance of T cell cross reactivity in stopping severe COVID-19 cases
Immune system memory stays strong 6+ months post-vaccination, similar to responses in recovered COVID-19 patients
Why declining antibodies don't spell disaster for long-lasting immunity
Scientists at La Jolla Institute for Immunology (LJI) lead new mpox vaccine research
LJI study suggests therapies could stop T cells from attacking brain cells in Parkinson's
The international recognition reflects how LJI research is valued by scientific peers
New LJI research gives detailed look at vulnerable sites on the novel coronavirus—beyond the receptor binding domain
New LJI research suggests many people already have T cells with the power to fight "highly pathogenic" avian influenza
When a T cell makes up its mind to kill, it does not mess around.
LJI scientists harness bioinformatics to predict how T cells may adapt to fighting the highly mutated Pirola variant
Finding may help explain why people 65 and above face a higher risk of falling critically ill with COVID-19
A year of scientific uncertainty is over. Two vaccines look like they will work, and more should follow.
The CDC is reporting every severe breakthrough, but less is known about non-severe cases.
Worries over waning antibodies may be overblown, as growing evidence shows a role for T cells in the coronavirus immune response.
COVID-19 boosters may lead to a stable antibody and T cell population in years to come

Links

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