Sette Lab

Alessandro Sette, Dr.Biol.Sci.

Professor

Center for Autoimmunity and Inflammation – Director
Center for Cancer Immunotherapy
Center for Vaccine Innovation

New infectious agents originate all the time dating back to the plague in the siege of Athens in the 7th century to the endemic flu in 1918 that killed 20 million people. For medical science, it’s a perennial race between new infectious diseases coming up and society reacting to them, understanding them and ultimately defeating them.

Overview


Dr. Alessandro Sette has devoted more than 35 years of study towards understanding the immune response, measuring immune activity, and developing disease intervention strategies against cancer, autoimmunity, allergy, and infectious diseases. The laboratory is defining in chemical terms the specific structures (epitopes) that the immune system recognizes, and uses this knowledge to measure and understand immune responses.

The Sette lab’s approach uses epitopes as specific probes to define the immune signatures associated with productive/protective immunity versus deficient immunity/immunopathology. This research will improve understanding of how the body successfully battles infection, and conversely, how pathogens escape the immune system, causing the individual to succumb to disease. Because of the laboratory’s success in its study of immune response, Sette and his team believe their research will lead to development of new therapeutic and prophylactic approaches to fighting infectious diseases. In this area, Dr. Sette’s disease focus has shifted over the years from HIV, HBV and HCV to emerging diseases and diseases of potential biodefense concern to, most recently, diseases and pathogens relevant to worldwide global health, including SARS-CoV-2, Dengue, Zika, Chikungunya, malaria, M. tuberculosis, B. pertussis, and shingles. Furthermore, Dr. Sette’s team has adapted the methods and techniques developed in the context of infectious disease to understand the T cell response to common allergens and to discover a cell component in Parkinson’s Disease.

Finally, Dr. Sette has overseen the design and curation efforts of the national Immune Epitope Database (IEDB), a freely available, widely used bioinformatics resource, since its inception in the early 2000s. The IEDB catalogs all epitopes for humans, non-human primates, rodents, and other vertebrates, from allergens, infectious diseases, autoantigens and transplants, and includes epitope prediction tools to accelerate immunology research around the world.

Additional Publications

Featured Publications

Mateus J, Grifoni A, Tarke A, Sidney J, Ramirez SI, Dan JM, Burger ZC, Rawlings SA, Smith DM, Phillips E, Mallal S, Lammers M, Rubiro P, Quiambao L, Sutherland A, Yu ED, da Silva Antunes R, Greenbaum J, Frazier A, Markmann AJ, Premkumar L, de Silva A, Peters B, Crotty S, Sette A, Weiskopf D.
Sette, A., Crotty, S
Grifoni, A., Weiskopf, D., Ramirez, S.I., Mateus, J., Dan, J.M., Moderbacher, C.R., Rawlings, S.A., Sutherland, A., Premkumar, L., Jadi, R.S., Marrama, D., de Silva, A.M., Frazier, A., Carlin, A., Greenbaum, J.A., Peters, B., Krammer, F., Smith, D.M., Crotty, S., Sette, A.,
Sette A, Crotty S.
Dan JM, Mateus J, Kato Y, Hastie KM, Yu ED, Faliti CE, Grifoni A, Ramirez SI, Haupt S, Frazier A, Nakao C, Rayaprolu V, Rawlings SA, Peters B, Krammer F, Simon V, Saphire EO, Smith DM, Weiskopf D, Sette A, Crotty S.
Goel RR, Painter MM, Apostolidis SA, Mathew D, Meng W, Rosenfeld AM, Lundgreen KA, Reynaldi A, Khoury DS, Pattekar A, Gouma S, Kuri-Cervantes L, Hicks P, Dysinger S, Hicks A, Sharma H, Herring S, Korte S, Baxter AE, Oldridge DA, Giles JR, Weirick ME, McAllister CM, Awofolaju M, Tanenbaum N, Drapeau EM, Dougherty J, Long S, D’Andrea K, Hamilton JT, McLaughlin M, Williams JC, Adamski S, Kuthuru O, UPenn COVID Processing Unit, Frank I, Betts MR, Vella LA, Grifoni A, Weiskopf D, Sette A, Hensley SE, Davenport MP, Bates P, Prak ETL, Greenplate AR, Wherry EJ.

Lab Members

Adam Abawi

Research Tech I

Nina Blazeska

IEDB Project Manager

Matthew Busse

Senior Curator

Kenneth Chan

Senior Curator

Sara Coleman, Ph.D.

Curator

Ricardo Da Silva Antunes

Sr. Staff Scientist

Sidne Fitzpatrick, Ph.D.

Curator

Gabriele Foos

Senior Curator

April Frazier, Ph.D.

Senior Project Manager

John Johansson, Ph.D.

Visiting Scientist

Min Han Lew, Ph.D.

Postdoctoral Fellow

Mariah Macias

Lab Assistant

Tanner Michaelis

Research Tech II

Erin Moore

Research Tech II

Priscila Morales, Associates

Project Coordinator

Jessica Nevarez-Mejia, Ph.D.

Postdoctoral Fellow

Brian Reardon, Ph.D.

Curator

Caitlin Sedwick, Ph.D.

Curator
Portrait photo of Alessandro Sette, Dr.Biol.Sci.

Alessandro Sette

Division Head/Center Head/Professor

Deborah Shackelford

Senior Curator

Amin Shaik

Research Tech I

Aaron Sutherland

Lab Manager/Research Tech III

Alison Tarke

Postdoctoral Fellow

Veronica Veksler, Ph.D.

Postdoctoral Fellow

Randi Vita

Lead Ontology & Quality Manager

Leora Zalman

Senior Curator

Research Projects

ATHEROSCLEROSIS Working in collaboration with LJI Professor Klaus Ley, the Sette Lab aims to help develop vaccines that target inflammatory factors as a means to reduce atherosclerotic plaque formation. The [...]

A collaboration with LJI Professor Alessandro Sette, Dr. Biol. Sci, to maintain and further develop the Immune Epitope Database (IEDB) and associated analysis resource. Previously awarded as HHSN26620040006C, and HHSN272201200010C. [...]

Reactivity study: A collaboration between the Sette lab and Shane Crotty, Ph.D., to document acquired immunity to SARS-CoV-2 and help guide COVID-19 vaccine developers. Their May 2020 Cell study documents [...]

From the Lab

New LJI research suggests many people already have T cells with the power to fight "highly pathogenic" avian influenza
Scientists at La Jolla Institute for Immunology (LJI) lead new mpox vaccine research
San Diego scientists investigate how immune cells combat rapidly spreading mpox strain
LA JOLLA, CA—New research from scientists at La Jolla Institute for Immunology (LJI) suggests people who received COVID-19 vaccines and then experienced “breakthrough” infections are especially well armed against future SARS-CoV-2 infections.
Tarke established important U.S.-Italy research collaborations amidst the COVID-19 pandemic
LJI scientists harness bioinformatics to predict how T cells may adapt to fighting the highly mutated Pirola variant

Links

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